Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1160

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9527 and 9528 are separated by 32 nucleotides9528 and 9529 are separated by 444 nucleotides mRNA_1159: 9527 - HMMPfam-Archaeal ATPase-PF01637,SUPERFAMILY--SSF52540, at 538,557 to 540,883 9527 mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540,916 to 543,538 9528 mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543,983 to 547,395 9529

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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539,930 - 9527 mRNA_1159 0.59 +1.1
539,988 + 9527 mRNA_1159 0.61 +1.3
540,016 - 9527 mRNA_1159 0.63 +1.1
540,047 - 9527 mRNA_1159 0.64 +0.3
540,091 - 9527 mRNA_1159 0.66 +0.0
540,239 - 9527 mRNA_1159 0.72 +0.1
540,278 + 9527 mRNA_1159 0.74 +0.7
540,284 - 9527 mRNA_1159 0.74 +0.5
540,366 + 9527 mRNA_1159 0.78 +0.1
540,401 - 9527 mRNA_1159 0.79 +0.3
540,471 - 9527 mRNA_1159 0.82 -0.8
540,562 + 9527 mRNA_1159 0.86 -0.3
540,650 - 9527 mRNA_1159 0.90 +0.4
540,777 + +1.0
540,849 + +0.3
540,937 - -1.0
542,483 - 9528 mRNA_1160 0.60 +0.4
542,544 + 9528 mRNA_1160 0.62 -0.1
542,984 + 9528 mRNA_1160 0.79 +0.4
543,198 + 9528 mRNA_1160 0.87 -0.2
543,806 + -1.1
543,829 + +0.5
543,830 - +1.7
543,836 - +0.3
543,844 - +0.3
543,845 + -0.7
543,958 - -0.5
543,978 + +0.5

Or see this region's nucleotide sequence