Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1175

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9542 and 9543 are separated by 484 nucleotides9543 and 9544 are separated by 229 nucleotides mRNA_1174: 9542 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 575,723 to 577,057 9542 mRNA_1175: 9543 - Hypothetical Protein, at 577,542 to 578,636 9543 mRNA_1176: 9544 - Hypothetical Protein, at 578,866 to 579,597 9544

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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576,542 - 9542 mRNA_1174 0.61 +0.8
576,548 + 9542 mRNA_1174 0.62 +0.1
576,571 + 9542 mRNA_1174 0.64 +0.1
576,600 - 9542 mRNA_1174 0.66 +0.4
576,649 - 9542 mRNA_1174 0.69 +0.3
576,688 - 9542 mRNA_1174 0.72 -0.2
576,742 - 9542 mRNA_1174 0.76 +0.6
576,745 - 9542 mRNA_1174 0.77 +0.1
576,857 + 9542 mRNA_1174 0.85 -0.2
576,979 + -0.1
576,984 + +1.4
577,026 + +0.8
577,118 - -0.3
577,139 - -0.3
577,610 + +0.0
577,639 + +1.2
577,824 - 9543 mRNA_1175 0.26 +0.9
577,854 + 9543 mRNA_1175 0.28 -0.9
577,881 - 9543 mRNA_1175 0.31 +0.3
577,991 + 9543 mRNA_1175 0.41 +1.5
578,076 - 9543 mRNA_1175 0.49 -0.1
578,084 + 9543 mRNA_1175 0.49 +0.4
578,485 - 9543 mRNA_1175 0.86 -0.0
578,787 + +0.3
578,798 - +0.3
578,936 + +0.7
578,954 - 9544 mRNA_1176 0.12 -0.0
579,077 - 9544 mRNA_1176 0.29 +0.8
579,097 + 9544 mRNA_1176 0.32 +0.8
579,097 + 9544 mRNA_1176 0.32 -0.8
579,377 + 9544 mRNA_1176 0.70 +2.3
579,410 + 9544 mRNA_1176 0.74 +1.9
579,415 - 9544 mRNA_1176 0.75 -0.9
579,422 - 9544 mRNA_1176 0.76 +0.7
579,547 + +1.0
579,554 - +0.4
579,555 + -1.0

Or see this region's nucleotide sequence