Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1180

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9547 and 9548 are separated by 780 nucleotides9548 and 9549 are separated by 283 nucleotides mRNA_1179: 9547 - K12611 DCP1B mRNA-decapping enzyme 1B, at 584,015 to 586,277 9547 mRNA_1180: 9548 - Hypothetical Protein, at 587,058 to 592,378 9548 mRNA_1181: 9549 - Hypothetical Protein, at 592,662 to 593,327 9549

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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586,158 - +1.7
586,314 + -0.1
586,447 - +1.4
586,560 - +0.2
586,715 - -0.1
586,741 + -0.1
586,838 + +1.1
586,842 + +0.2
586,899 - +0.2
586,946 - +0.6
587,608 - 9548 mRNA_1180 0.10 +0.2
587,927 + 9548 mRNA_1180 0.16 +0.4
588,040 - 9548 mRNA_1180 0.18 +1.3
588,045 + 9548 mRNA_1180 0.19 +0.5
588,064 - 9548 mRNA_1180 0.19 -0.1
588,177 + 9548 mRNA_1180 0.21 -0.1
588,319 - 9548 mRNA_1180 0.24 +0.0
588,620 + 9548 mRNA_1180 0.29 +1.2
588,868 + 9548 mRNA_1180 0.34 +0.4
588,898 + 9548 mRNA_1180 0.35 +1.8
589,038 - 9548 mRNA_1180 0.37 +0.1
589,062 - 9548 mRNA_1180 0.38 +0.9
589,072 + 9548 mRNA_1180 0.38 +0.2
589,184 - 9548 mRNA_1180 0.40 +0.4
589,213 + 9548 mRNA_1180 0.40 +0.6
589,253 + 9548 mRNA_1180 0.41 -0.3
589,330 - 9548 mRNA_1180 0.43 +0.2
589,436 - 9548 mRNA_1180 0.45 -0.2
589,468 - 9548 mRNA_1180 0.45 +0.1
589,478 + 9548 mRNA_1180 0.45 +0.5
589,613 + 9548 mRNA_1180 0.48 +0.9
589,766 - 9548 mRNA_1180 0.51 +0.2
589,805 + 9548 mRNA_1180 0.52 +0.9
589,805 + 9548 mRNA_1180 0.52 -0.3
589,903 - 9548 mRNA_1180 0.53 -0.2
589,910 + 9548 mRNA_1180 0.54 +0.5
590,080 + 9548 mRNA_1180 0.57 -1.2
590,299 - 9548 mRNA_1180 0.61 +0.5
590,349 - 9548 mRNA_1180 0.62 +0.3
590,668 + 9548 mRNA_1180 0.68 +0.6
590,805 - 9548 mRNA_1180 0.70 -0.5
591,012 + 9548 mRNA_1180 0.74 -1.1
591,201 + 9548 mRNA_1180 0.78 +0.8
591,661 - 9548 mRNA_1180 0.87 +0.1
591,715 - 9548 mRNA_1180 0.88 +0.2
591,791 + 9548 mRNA_1180 0.89 +0.5
591,922 - +0.2
591,923 + +0.4
591,934 - +0.3
592,120 + -0.0
592,121 + -0.5
592,124 - +1.6
592,209 + +2.7
592,228 + +0.0
592,284 + +0.6
592,287 - +1.7
592,289 + +1.0
592,653 + -0.6
592,702 - +0.0
592,835 - 9549 mRNA_1181 0.26 +0.1
593,119 - 9549 mRNA_1181 0.69 +0.5
593,361 + -0.0

Or see this region's nucleotide sequence