Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1201

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9568 and 9569 are separated by 201 nucleotides mRNA_1200: 9568 - KOG3132 m3G-cap-specific nuclear import receptor (Snurportin1), at 636,732 to 638,216 9568 mRNA_1201: 9569 - K12625 LSM6 U6 snRNA-associated Sm-like protein LSm6, at 638,418 to 638,898 9569

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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637,499 - 9568 mRNA_1200 0.52 -0.1
637,668 - 9568 mRNA_1200 0.63 -0.2
637,693 + 9568 mRNA_1200 0.65 -0.2
637,696 - 9568 mRNA_1200 0.65 +0.6
638,006 - 9568 mRNA_1200 0.86 -1.2
638,166 + +0.3
638,193 - +0.7
639,063 - +2.4
639,300 - +1.0
639,315 - -0.0
639,322 + +1.1
639,325 + +0.8
639,731 - -0.4
639,736 - -0.3
639,737 + +0.5
639,738 + +0.5
639,740 + -0.2
639,744 + +0.8
639,746 - -0.0
639,749 - +1.1
639,754 - +0.4
639,759 - +0.3
639,761 - -0.2
639,763 + +0.4
639,764 + +0.9
639,765 + +0.4
639,766 + +0.5
639,766 - +0.6
639,767 - +0.0
639,769 - -0.6
639,771 - -0.8
639,780 - +0.6
639,781 + -0.2
639,781 + -0.1
639,783 + +0.6
639,790 - -1.2
639,810 + +0.6
639,817 - +0.4
639,852 - -0.2
639,854 - +1.0
639,876 - +0.2
639,876 - +0.4

Or see this region's nucleotide sequence