Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1206

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9573 and 9574 are separated by 245 nucleotides9574 and 9575 are separated by 673 nucleotides mRNA_1205: 9573 - Hypothetical Protein, at 645,858 to 646,499 9573 mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646,745 to 651,192 9574 mRNA_1207: 9575 - BLAST glycosyltransferase [Tsuchiyaea wingfieldii CBS 7..., at 651,866 to 653,313 9575

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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645,747 + -1.0
645,751 - +0.3
645,763 - -0.0
645,846 + -0.4
645,862 - +0.5
645,870 - -0.4
646,165 - 9573 mRNA_1205 0.48 -0.0
646,195 - 9573 mRNA_1205 0.52 +0.0
646,329 - 9573 mRNA_1205 0.73 +0.2
646,356 - 9573 mRNA_1205 0.78 +1.4
646,358 + 9573 mRNA_1205 0.78 -0.6
646,370 - 9573 mRNA_1205 0.80 -0.1
646,375 - 9573 mRNA_1205 0.81 +0.2
646,480 - +0.7
646,494 - +0.8
646,494 - +0.0
646,502 + +0.6
646,503 - +0.2
646,504 + +0.4
646,505 - +0.3
646,514 + -0.3
646,518 - -0.6
646,526 + -0.1
646,610 + -1.0
646,660 - -1.2
651,466 - -0.2
651,635 + +0.1

Or see this region's nucleotide sequence