Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1207

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9574 and 9575 are separated by 673 nucleotides9575 and 9576 are separated by 993 nucleotides mRNA_1206: 9574 - K00021 HMGCR hydroxymethylglutaryl-CoA reductase (NADPH), at 646,745 to 651,192 9574 mRNA_1207: 9575 - BLAST glycosyltransferase [Tsuchiyaea wingfieldii CBS 7..., at 651,866 to 653,313 9575 mRNA_1208: 9576 - Hypothetical Protein, at 654,307 to 655,456 9576

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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651,466 - -0.2
651,635 + +0.1
652,232 + 9575 mRNA_1207 0.25 +0.4
652,328 - 9575 mRNA_1207 0.32 -0.6
652,332 - 9575 mRNA_1207 0.32 +0.3
652,673 + 9575 mRNA_1207 0.56 -1.1
653,066 - 9575 mRNA_1207 0.83 +0.2
653,130 - 9575 mRNA_1207 0.87 +0.6
653,744 + +0.9
653,907 + -0.5
654,017 - +1.7

Or see this region's nucleotide sequence