Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1229

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9596 and 9597 are separated by 347 nucleotides mRNA_1228: 9596 - K00693 GYS glycogen synthase, at 699,587 to 703,104 9596 mRNA_1229: 9597 - SUPERFAMILY--SSF52047, at 703,452 to 704,884 9597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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702,763 - -0.8
702,787 + -0.0
703,072 - +0.0
703,125 - +1.1
703,323 + +0.4
703,326 - +0.2
703,650 - 9597 mRNA_1229 0.14 -0.1
704,070 + 9597 mRNA_1229 0.43 +0.7
704,396 + 9597 mRNA_1229 0.66 -0.5
704,517 - 9597 mRNA_1229 0.74 -0.1
704,526 + 9597 mRNA_1229 0.75 +0.6
704,535 - 9597 mRNA_1229 0.76 +1.5
704,566 - 9597 mRNA_1229 0.78 +0.0
704,569 + 9597 mRNA_1229 0.78 +0.1
704,594 + 9597 mRNA_1229 0.80 -0.0
704,810 - +0.3
705,134 - -0.1
705,537 + +0.8
705,538 + +1.1
705,550 + -0.6
705,832 - +0.9
705,839 - +0.9
705,872 - +0.0
705,873 + +1.2
705,879 - -1.0

Or see this region's nucleotide sequence