Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1234

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9601 and 9602 are separated by 506 nucleotides9602 and 9603 are separated by 562 nucleotides mRNA_1233: 9601 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 713,188 to 714,152 9601 mRNA_1234: 9602 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 714,659 to 715,622 9602 mRNA_1235: 9603 - K12818 DHX8, PRP22 ATP-dependent RNA helicase DHX8/PRP22, at 716,185 to 721,769 9603

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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714,308 + +1.1
714,355 + +1.3
714,888 - 9602 mRNA_1234 0.24 +0.1
715,254 - 9602 mRNA_1234 0.62 -0.1
715,486 - 9602 mRNA_1234 0.86 -0.3
715,639 - +0.3
715,734 + +0.4
715,921 - +0.5
715,929 - +0.5
716,273 + +1.0
716,350 + +0.7
716,364 - +0.2
716,420 - -0.4
716,421 + +1.1
716,527 - -0.5

Or see this region's nucleotide sequence