Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1255

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9622 and 9623 are separated by 183 nucleotides9623 and 9624 are separated by 293 nucleotides mRNA_1254: 9622 - K02150 ATPeV1E, ATP6E V-type H+-transporting ATPase subunit E, at 761,130 to 762,354 9622 mRNA_1255: 9623 - KOG1808 AAA ATPase containing von Willebrand factor type A (vWA) domain, at 762,538 to 767,686 9623 mRNA_1256: 9624 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF81383, at 767,980 to 768,375 9624

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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762,449 + +1.0
762,483 - -0.8
762,483 - +2.6
762,484 + -0.1
762,486 + +0.4
762,489 - +1.0
762,511 + -1.0
762,586 + +0.4
762,591 - +0.1
762,619 + +0.3
762,635 - +0.7
762,642 + +1.3
762,646 + +0.1
762,669 + -0.9
762,771 - +0.3
762,789 - +0.6
762,934 - +0.2
762,976 + +0.4
763,041 - -0.1
763,050 + +0.6
763,095 - 9623 mRNA_1255 0.11 -0.9
763,231 - 9623 mRNA_1255 0.13 +1.1
763,237 + 9623 mRNA_1255 0.14 +0.5
763,240 + 9623 mRNA_1255 0.14 +0.4
763,322 - 9623 mRNA_1255 0.15 +1.5
763,359 + 9623 mRNA_1255 0.16 +0.3
763,481 - 9623 mRNA_1255 0.18 +0.3
763,563 - 9623 mRNA_1255 0.20 +0.4
763,826 - 9623 mRNA_1255 0.25 -0.7
763,834 - 9623 mRNA_1255 0.25 +0.3
763,941 - 9623 mRNA_1255 0.27 -0.3
764,251 - 9623 mRNA_1255 0.33 +0.6
764,343 + 9623 mRNA_1255 0.35 +0.4
764,386 + 9623 mRNA_1255 0.36 -0.0
764,580 + 9623 mRNA_1255 0.40 -0.3
764,633 + 9623 mRNA_1255 0.41 -0.1
764,683 - 9623 mRNA_1255 0.42 +0.3
764,712 - 9623 mRNA_1255 0.42 +0.3
764,857 - 9623 mRNA_1255 0.45 -0.1
764,858 - 9623 mRNA_1255 0.45 -0.3
764,917 + 9623 mRNA_1255 0.46 +0.5
764,962 + 9623 mRNA_1255 0.47 -0.1
765,275 - 9623 mRNA_1255 0.53 +0.4
765,413 - 9623 mRNA_1255 0.56 +1.0
765,434 - 9623 mRNA_1255 0.56 -0.2
765,434 - 9623 mRNA_1255 0.56 +1.5
765,509 - 9623 mRNA_1255 0.58 +0.7
765,513 + 9623 mRNA_1255 0.58 -0.3
765,514 - 9623 mRNA_1255 0.58 +0.5
765,519 - 9623 mRNA_1255 0.58 +0.9
765,519 - 9623 mRNA_1255 0.58 +0.3
765,540 + 9623 mRNA_1255 0.58 +0.2
765,546 + 9623 mRNA_1255 0.58 +0.8
765,613 + 9623 mRNA_1255 0.60 +0.5
765,657 + 9623 mRNA_1255 0.61 -0.7
765,681 - 9623 mRNA_1255 0.61 -0.2
765,705 - 9623 mRNA_1255 0.62 +1.2
765,803 + 9623 mRNA_1255 0.63 +0.3
765,816 - 9623 mRNA_1255 0.64 +0.5
765,934 + 9623 mRNA_1255 0.66 +0.6
765,984 - 9623 mRNA_1255 0.67 +0.3
766,023 - 9623 mRNA_1255 0.68 +0.7
766,025 - 9623 mRNA_1255 0.68 +0.3
766,154 - 9623 mRNA_1255 0.70 +0.4
766,401 + 9623 mRNA_1255 0.75 +0.2
766,461 - 9623 mRNA_1255 0.76 +0.5
766,493 - 9623 mRNA_1255 0.77 +0.4
766,562 - 9623 mRNA_1255 0.78 +0.2
766,767 + 9623 mRNA_1255 0.82 +1.5
766,878 + 9623 mRNA_1255 0.84 -0.1
766,892 + 9623 mRNA_1255 0.85 +0.2
767,011 + 9623 mRNA_1255 0.87 +0.3
767,045 - 9623 mRNA_1255 0.88 -0.2
767,126 - 9623 mRNA_1255 0.89 +0.8
767,350 - +0.8
767,470 - +0.2
767,726 - +0.7
767,750 + +0.3
767,910 + +0.7
767,914 - +0.6
768,001 + +0.5
768,011 + -1.5
768,383 - +0.5
768,531 - -0.1
768,537 + -0.1
768,631 + +0.8

Or see this region's nucleotide sequence