Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1280

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9648 and 9649 are separated by 239 nucleotides mRNA_1280: 9648 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657, at 825,311 to 827,101 9648 mRNA_1281: 9649 - HMMPfam-Peptidase M50B-like-PF13398, at 827,341 to 829,667 9649

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
824,386 - +0.4
824,792 - -0.0
824,796 + +0.6
824,800 + +0.7
824,821 + +1.2
824,821 + +0.3
824,866 + +0.7
824,874 - +0.8
824,874 + +0.9
824,894 + -0.5
825,013 + +1.6
825,046 - -0.2
825,053 + +0.4
825,054 - +0.2
825,095 - +0.0
825,116 - +0.3
825,141 + +0.8
825,141 + +1.0
825,178 - +0.3
825,184 - +0.4
825,190 + +0.0
825,191 - +1.9
825,193 - +0.5
825,198 + +1.1
825,200 - +0.3
825,206 + +0.5
825,211 + +0.4
825,211 + +0.3
825,224 - +0.9
825,241 - +0.3
825,243 + -0.7
825,244 - +0.8
825,245 - -0.1
825,359 - -0.8
825,376 - +0.6
825,819 - 9648 mRNA_1280 0.28 +0.2
825,826 + 9648 mRNA_1280 0.29 +0.8
826,980 + +0.2
826,982 + +0.5
826,986 + -0.4
827,048 + +0.5
827,056 + +0.6
827,147 - -1.1
827,293 - +0.4
827,305 + +0.2
827,345 + -0.4
827,413 + -0.0
827,425 + -0.8
827,444 + +0.3
827,495 - -0.5
827,512 - +0.5
827,593 - 9649 mRNA_1281 0.11 +0.2
827,594 + 9649 mRNA_1281 0.11 +0.4
827,653 + 9649 mRNA_1281 0.13 +0.0
827,858 + 9649 mRNA_1281 0.22 +0.3
827,878 - 9649 mRNA_1281 0.23 +0.4
827,983 - 9649 mRNA_1281 0.28 +0.5

Or see this region's nucleotide sequence