Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1312

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9679 and 9680 are separated by 202 nucleotides9680 and 9681 are separated by 393 nucleotides mRNA_1311: 9679 - K11599 POMP, UMP1 proteasome maturation protein, at 897,559 to 898,408 9679 mRNA_1312: 9680 - KOG4690 Uncharacterized conserved protein, at 898,611 to 899,248 9680 mRNA_1313: 9681 - K18586 COQ4 ubiquinone biosynthesis protein COQ4, at 899,642 to 900,633 9681

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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897,674 - 9679 mRNA_1311 0.14 +0.8
898,669 + +0.6
898,813 + 9680 mRNA_1312 0.32 -0.1
898,968 + 9680 mRNA_1312 0.56 +0.2
899,254 + +0.8
899,265 - +0.2
899,288 - +0.7
899,477 + +0.4
899,534 - -0.6
899,569 - -0.2
899,576 + +0.8
899,577 + +0.5

Or see this region's nucleotide sequence