Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1330

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9697 and 9698 are separated by 273 nucleotides9698 and 9699 are separated by 362 nucleotides mRNA_1329: 9697 - HMMPfam-SUZ domain-PF12752,ProSiteProfiles-SUZ domain profile.-PS51673, at 8,055 to 8,960 9697 mRNA_1330: 9698 - HMMPfam-LCCL domain-PF03815,ProSiteProfiles-LCCL domain profile.-PS50820,SUPERFAMILY--SSF69848, at 9,234 to 11,606 9698 mRNA_1331: 9699 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 11,969 to 15,219 9699

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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8,393 - 9697 mRNA_1329 0.37 +0.3
8,402 - 9697 mRNA_1329 0.38 +0.3
8,435 - 9697 mRNA_1329 0.42 -0.0
8,577 + 9697 mRNA_1329 0.58 -1.7
8,599 + 9697 mRNA_1329 0.60 -0.6
8,603 + 9697 mRNA_1329 0.60 +0.3
8,708 + 9697 mRNA_1329 0.72 -0.0
8,856 - 9697 mRNA_1329 0.88 -0.3
8,864 - 9697 mRNA_1329 0.89 +0.9
9,016 - +0.1
9,048 - -0.1
9,057 - +1.7
9,182 + +0.0
9,299 - +0.9
9,321 - -0.2
9,448 + -0.0
9,472 - 9698 mRNA_1330 0.10 +0.6
9,597 - 9698 mRNA_1330 0.15 +0.3
9,731 + 9698 mRNA_1330 0.21 +0.2
9,864 + 9698 mRNA_1330 0.27 +1.0
9,892 + 9698 mRNA_1330 0.28 +0.2
10,211 + 9698 mRNA_1330 0.41 +0.8
10,242 - 9698 mRNA_1330 0.42 +0.0
10,287 - 9698 mRNA_1330 0.44 +0.4
10,314 - 9698 mRNA_1330 0.46 -0.0
10,381 + 9698 mRNA_1330 0.48 +0.1
10,382 + 9698 mRNA_1330 0.48 +1.8
10,395 - 9698 mRNA_1330 0.49 -0.5
10,480 - 9698 mRNA_1330 0.53 +0.5
10,487 + 9698 mRNA_1330 0.53 -0.2
10,744 + 9698 mRNA_1330 0.64 +0.3
11,171 - 9698 mRNA_1330 0.82 +0.4
11,207 - 9698 mRNA_1330 0.83 -0.5
11,208 - 9698 mRNA_1330 0.83 -0.4
11,222 + 9698 mRNA_1330 0.84 +1.0
11,517 - -0.1
11,521 - +1.6
11,556 - -0.1
11,591 + -0.3
11,637 + +0.1
11,673 - +0.1
11,675 - -0.2
11,679 - -0.2
11,680 + +0.8
11,689 + +0.2
11,693 + +0.2
11,695 - +0.4
11,698 + +1.5
11,699 + +1.0
11,706 - -0.1
11,707 + +1.4
11,714 + -0.9
11,819 + +0.5
11,820 + +0.1
11,821 - -0.7
11,822 - -0.2
11,832 - +0.6
11,879 + +0.4
12,292 + +1.3

Or see this region's nucleotide sequence