Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1343

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9710 and 9711 are separated by 119 nucleotides9711 and 9712 are separated by 239 nucleotides mRNA_1342: 9710 - SUPERFAMILY--SSF52047, at 39,256 to 40,650 9710 mRNA_1343: 9711 - K00698 CHS1 chitin synthase, at 40,770 to 45,014 9711 mRNA_1344: 9712 - K06063 SNW1, SKIIP, SKIP SNW domain-containing protein 1, at 45,254 to 47,593 9712

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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39,799 + 9710 mRNA_1342 0.39 +0.7
40,048 - 9710 mRNA_1342 0.57 +0.8
40,083 - 9710 mRNA_1342 0.59 +0.3
40,409 - 9710 mRNA_1342 0.83 -0.3
40,633 + +0.4
40,800 + -0.9
40,967 - +0.7
40,968 + +0.3
41,017 + +0.5
41,320 - 9711 mRNA_1343 0.13 +0.9
41,595 - 9711 mRNA_1343 0.19 +0.2
42,056 - 9711 mRNA_1343 0.30 -0.7
42,125 - 9711 mRNA_1343 0.32 -0.6
42,200 - 9711 mRNA_1343 0.34 +0.1
42,356 + 9711 mRNA_1343 0.37 +0.4
42,507 - 9711 mRNA_1343 0.41 +1.2
42,583 - 9711 mRNA_1343 0.43 +0.7
42,642 - 9711 mRNA_1343 0.44 +2.0
42,713 + 9711 mRNA_1343 0.46 -0.5
42,784 - 9711 mRNA_1343 0.47 -0.6
42,825 - 9711 mRNA_1343 0.48 +0.5
42,835 + 9711 mRNA_1343 0.49 +0.0
42,959 - 9711 mRNA_1343 0.52 -0.2
42,993 + 9711 mRNA_1343 0.52 +0.6
43,046 + 9711 mRNA_1343 0.54 +0.2
43,215 - 9711 mRNA_1343 0.58 -0.4
43,229 + 9711 mRNA_1343 0.58 -0.0
43,279 + 9711 mRNA_1343 0.59 -0.0
43,280 + 9711 mRNA_1343 0.59 +0.3
43,331 + 9711 mRNA_1343 0.60 +1.3
43,361 - 9711 mRNA_1343 0.61 +1.3
43,374 - 9711 mRNA_1343 0.61 +0.1
43,425 - 9711 mRNA_1343 0.63 +2.1
43,429 + 9711 mRNA_1343 0.63 +0.7
43,431 - 9711 mRNA_1343 0.63 -0.4
43,532 - 9711 mRNA_1343 0.65 +0.7
43,546 - 9711 mRNA_1343 0.65 +1.3
43,552 + 9711 mRNA_1343 0.66 -0.9
43,552 + 9711 mRNA_1343 0.66 +1.3
43,552 + 9711 mRNA_1343 0.66 -0.1
43,552 + 9711 mRNA_1343 0.66 +1.0
43,663 - 9711 mRNA_1343 0.68 -0.2
43,681 - 9711 mRNA_1343 0.69 +0.6
43,821 - 9711 mRNA_1343 0.72 +0.3
44,114 + 9711 mRNA_1343 0.79 +0.8
44,281 - 9711 mRNA_1343 0.83 +0.3
44,510 + 9711 mRNA_1343 0.88 +0.8
44,890 + -0.3
44,991 + -0.6
45,108 + -0.4
45,131 + -1.0
45,186 - +0.2
45,188 - -0.0
45,189 + -0.3
45,189 + +0.7

Or see this region's nucleotide sequence