Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1383

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9750 and 9751 are separated by 442 nucleotides9751 and 9752 are separated by 185 nucleotides mRNA_1382: 9750 - K11805 WDR68, HAN11 WD repeat-containing protein 68, at 139,851 to 141,572 9750 mRNA_1383: 9751 - HMMPfam-Nse4 C-terminal-PF08743,HMMPfam-Binding domain of Nse4/EID3 to Nse3-MAGE-PF15412, at 142,015 to 143,615 9751 mRNA_1384: 9752 - KOG4472 Glycolipid 2-alpha-mannosyltransferase (alpha-1,2-mannosyltransferase), at 143,801 to 145,438 9752

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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141,184 + 9750 mRNA_1382 0.77 +0.7
141,214 + 9750 mRNA_1382 0.79 +0.9
141,302 - 9750 mRNA_1382 0.84 -0.2
141,348 - 9750 mRNA_1382 0.87 -0.2
141,397 + 9750 mRNA_1382 0.90 +0.4
141,515 - +0.8
141,789 - +0.5
141,817 + +0.0
141,826 - -0.2
141,958 + +1.0
144,137 + 9752 mRNA_1384 0.21 +1.3
144,145 + 9752 mRNA_1384 0.21 +0.4
144,283 + 9752 mRNA_1384 0.29 +0.4
144,427 + 9752 mRNA_1384 0.38 +0.4
144,491 - 9752 mRNA_1384 0.42 +1.6

Or see this region's nucleotide sequence