Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1388

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9755 and 9756 are separated by 629 nucleotides mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148,746 to 149,519 9755 mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150,149 to 154,291 9756

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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149,278 - 9755 mRNA_1387 0.69 -0.5
149,404 - 9755 mRNA_1387 0.85 -0.1
149,417 + 9755 mRNA_1387 0.87 +0.5
149,719 + +0.4
149,727 - +0.4
149,739 - +0.4
149,990 + +0.2
150,006 + -0.3
150,097 - -0.2
150,279 + +0.3
150,566 - 9756 mRNA_1388 0.10 +0.1
150,777 + 9756 mRNA_1388 0.15 +0.6
151,319 - 9756 mRNA_1388 0.28 -0.2
151,568 + 9756 mRNA_1388 0.34 +1.4
151,593 + 9756 mRNA_1388 0.35 -1.0
151,881 - 9756 mRNA_1388 0.42 +0.3
152,049 + 9756 mRNA_1388 0.46 +0.7
152,182 + 9756 mRNA_1388 0.49 +0.5
152,188 + 9756 mRNA_1388 0.49 +0.1
152,606 - 9756 mRNA_1388 0.59 +1.1
152,715 + 9756 mRNA_1388 0.62 +0.3
152,773 - 9756 mRNA_1388 0.63 -0.3
152,865 + 9756 mRNA_1388 0.66 -1.0
153,326 + 9756 mRNA_1388 0.77 +0.4
153,917 + -1.0
154,059 - +0.9
154,182 + +0.6
154,755 - +1.1
154,788 + +1.2
154,918 - +0.5
155,056 + -0.6
155,060 + +0.6
155,069 - -0.2
155,091 - +0.6
155,127 + +0.5
155,216 + -0.9
155,226 + +0.7
155,231 - -0.7
155,239 + +0.5
155,249 + +2.3

Or see this region's nucleotide sequence