Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1425

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9793 and 9794 are separated by 301 nucleotides mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985 9793 mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707 9794

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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252,581 + -0.8
252,782 - +0.5
252,866 + +0.9
252,872 + -0.1
252,880 - +0.2
253,009 + +0.3
253,019 - +1.1
253,021 - +0.9
253,021 + +1.6
253,099 - +0.8
253,106 + -0.0
253,129 - +0.3
253,152 + -0.3
253,168 - +0.3
253,170 + +1.3
253,176 - +0.4
253,179 + +0.3
253,179 + +0.5
253,201 + +0.2
253,677 - 9793 mRNA_1425 0.12 -0.2
254,649 - 9793 mRNA_1425 0.38 +1.4
255,149 + 9793 mRNA_1425 0.51 +0.2
255,470 + 9793 mRNA_1425 0.60 -0.0
255,977 - 9793 mRNA_1425 0.73 +0.6
255,993 + 9793 mRNA_1425 0.74 +1.3
256,012 + 9793 mRNA_1425 0.74 +0.0
256,048 + 9793 mRNA_1425 0.75 +0.6
256,111 + 9793 mRNA_1425 0.77 +0.4
256,259 - 9793 mRNA_1425 0.81 -1.0
256,413 - 9793 mRNA_1425 0.85 -1.0
256,440 - 9793 mRNA_1425 0.85 -0.1
256,534 + 9793 mRNA_1425 0.88 -1.1
256,993 - +0.6
257,627 + 9794 mRNA_1426 0.24 +0.1
257,783 + 9794 mRNA_1426 0.35 +0.2

Or see this region's nucleotide sequence