Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1438

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9806 and 9807 are separated by 317 nucleotides mRNA_1438: 9806 - Hypothetical Protein, at 280,347 to 281,494 9806 mRNA_1439: 9807 - K03544 clpX, CLPX ATP-dependent Clp protease ATP-binding subunit ClpX, at 281,812 to 284,553 9807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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279,427 - -0.0
279,457 + +0.0
279,607 + -0.1
279,617 + +0.7
279,763 + -0.1
279,768 + +0.6
280,325 - -0.4
280,611 - 9806 mRNA_1438 0.23 +1.7
280,700 - 9806 mRNA_1438 0.31 +0.8
280,901 + 9806 mRNA_1438 0.48 +0.5
280,917 + 9806 mRNA_1438 0.50 -0.5
281,024 - 9806 mRNA_1438 0.59 -0.3
281,048 - 9806 mRNA_1438 0.61 +1.4
281,084 + 9806 mRNA_1438 0.64 +0.8
281,231 + 9806 mRNA_1438 0.77 +1.6
281,357 + 9806 mRNA_1438 0.88 +0.5
281,363 - 9806 mRNA_1438 0.89 +0.5
281,371 + 9806 mRNA_1438 0.89 +2.2
281,619 - +1.8
281,629 - +0.8
281,739 - +0.2
281,753 - -0.2
281,756 + +0.4
281,757 + +1.5
281,888 - +0.4
281,941 - +2.1
281,944 + +0.3
282,052 - +0.6
282,195 - 9807 mRNA_1439 0.14 +0.5

Or see this region's nucleotide sequence