Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1467

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9834 and 9835 are separated by 359 nucleotides mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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353,973 - -0.6
353,985 + -0.4
354,103 - +0.3
354,124 - -0.4
354,184 + +0.6
354,210 + +0.3
354,220 - +0.9
354,232 - +0.8
354,241 - +1.2
354,252 + +1.7
354,297 - -0.8
354,339 - +0.7
354,341 + +0.3
354,360 + +0.2
354,365 + +0.1
354,382 + +0.3
354,411 + +0.4
354,424 - +0.8
354,433 - +0.4
354,514 + +1.7
354,540 + +0.4
354,543 + -0.7
354,552 + +0.9
354,592 + +0.2
354,689 - -0.6
354,713 - +0.7
354,720 - +0.2
354,740 + +0.5
354,814 + +1.4
354,859 - +0.7
354,864 + +0.6
355,155 + 9835 mRNA_1467 0.16 +0.7
355,433 + 9835 mRNA_1467 0.22 -0.1
356,458 + 9835 mRNA_1467 0.45 +1.1
356,610 - 9835 mRNA_1467 0.48 +0.2
356,707 + 9835 mRNA_1467 0.50 +0.7
357,503 + 9835 mRNA_1467 0.68 +0.8
357,512 + 9835 mRNA_1467 0.68 +0.2
357,633 - 9835 mRNA_1467 0.71 -1.5
357,796 + 9835 mRNA_1467 0.74 -0.2
358,063 - 9835 mRNA_1467 0.80 +0.2
358,096 + 9835 mRNA_1467 0.81 +1.4
358,178 + 9835 mRNA_1467 0.83 -1.3
358,816 + -1.6
358,964 + +1.0
359,128 - +0.2
359,131 + -1.0
359,845 - -0.1

Or see this region's nucleotide sequence