Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1468

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1468: 9836 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 360,687 to 364,959 9836

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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359,845 - -0.1
360,024 + +0.2
360,678 + +1.1
360,724 + +0.2
361,487 - 9836 mRNA_1468 0.19 -2.8
362,116 + 9836 mRNA_1468 0.33 +0.8
362,379 - 9836 mRNA_1468 0.40 +0.5
363,476 - 9836 mRNA_1468 0.65 -0.0
364,148 - 9836 mRNA_1468 0.81 -0.5
364,157 - 9836 mRNA_1468 0.81 +0.5
364,766 - -0.2
364,848 + -0.1
364,868 + +0.8
364,979 - +0.2
365,010 - -1.3
365,016 - +0.0
365,162 - +0.8
365,187 + +0.1
365,310 + +0.6
365,327 - +1.8
365,337 - +1.7
365,340 + +0.5
365,345 - +0.8
365,347 - +1.0
365,349 + -1.7
365,354 + +0.6
365,355 + -0.1
365,358 + +0.5
365,360 + +0.2
365,481 + +0.8
365,482 - +1.6
365,482 + +0.7
365,483 + +1.3
365,485 - +0.1
365,496 - +0.5
365,505 + +0.1
365,506 - +0.5
365,506 + -0.5
365,506 - -1.1
365,536 - -0.5
365,625 - +0.8
365,642 - +0.5
365,653 + +0.7
365,660 - +0.5
365,669 - +0.9
365,687 - -0.5

Or see this region's nucleotide sequence