Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1498

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9865 and 9866 are separated by 617 nucleotides9866 and 9867 are separated by 468 nucleotides mRNA_1497: 9865 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 450,422 to 453,504 9865 mRNA_1498: 9866 - K11129 NHP2, NOLA2 H/ACA ribonucleoprotein complex subunit 2, at 454,122 to 455,195 9866 mRNA_1499: 9867 - KOG1231 Proteins containing the FAD binding domain, at 455,664 to 457,570 9867

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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453,133 + 9865 mRNA_1497 0.88 +0.3
453,167 - 9865 mRNA_1497 0.89 -0.8
453,280 - -0.3
453,300 + +0.8
453,318 + +0.5
453,421 - -0.6
453,467 + -0.3
453,563 - +0.4
453,596 - +0.8
453,598 - +0.2
453,602 - +0.2
453,603 - -0.3
453,606 + +1.8
453,625 + -0.1
453,635 - +0.2
453,638 - +1.1
453,638 + +0.5
453,653 + -0.9
453,658 + +0.2
453,667 + +1.0
453,682 - -0.3
453,771 + +1.1
453,793 - +1.5
453,795 - +0.4
453,816 + +0.5
453,818 - -0.1
453,822 - -0.2
453,833 + +0.2
453,833 - +1.5
453,834 + +0.0
453,836 - +0.5
453,837 + +0.5
453,856 + -0.1
453,874 + +0.9
453,968 + +0.7
453,974 + +1.6
453,990 + +0.7
453,991 + +1.5
453,993 - +0.6
455,264 - +0.4
455,357 - +0.6
455,401 - +0.7
455,402 - +0.2
455,405 + +0.2
455,411 - +0.6
455,414 - +0.5
455,415 - +0.2
455,420 + +0.1
455,420 + +0.2
455,424 + -0.2
455,427 - -0.9
455,429 - -0.9
455,442 + -1.2
455,447 - +0.3
455,475 - +0.6
455,509 + +0.1
455,528 - -0.4
455,532 + +1.0
455,556 - +0.3
455,559 - +0.1
455,565 - +1.9
455,574 - +0.8
455,578 - +0.6
455,578 + -0.7
455,578 - -0.2
455,633 - -0.0
455,707 - +1.3
455,709 + +0.2
455,866 - 9867 mRNA_1499 0.11 +0.5
455,872 - 9867 mRNA_1499 0.11 -0.8
455,874 + 9867 mRNA_1499 0.11 -0.3
455,893 + 9867 mRNA_1499 0.12 +0.9
455,927 - 9867 mRNA_1499 0.14 +0.2
456,053 + 9867 mRNA_1499 0.20 -0.2
456,131 - 9867 mRNA_1499 0.24 +0.4

Or see this region's nucleotide sequence