Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1533

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9900 and 9901 are separated by 200 nucleotides9901 and 9902 are separated by 214 nucleotides mRNA_1532: 9900 - K00766 trpD anthranilate phosphoribosyltransferase, at 527,155 to 528,581 9900 mRNA_1533: 9901 - K04649 HIP2, UBC1 ubiquitin-conjugating enzyme (huntingtin interacting protein 2), at 528,782 to 530,057 9901 mRNA_1534: 9902 - K12493 ARFGAP2_3 ADP-ribosylation factor GTPase-activating protein 2/3, at 530,272 to 532,362 9902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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528,650 + +0.2
528,781 + -0.2
528,904 + +0.4
529,799 - 9901 mRNA_1533 0.80 -0.6
529,821 - 9901 mRNA_1533 0.81 +0.5
530,259 - +0.2

Or see this region's nucleotide sequence