Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1547

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9914 and 9915 are separated by 103 nucleotides9915 and 9916 are separated by 531 nucleotides mRNA_1546: 9914 - K18040 PTPN23 tyrosine-protein phosphatase non-receptor type 23, at 559,318 to 562,481 9914 mRNA_1547: 9915 - K14402 CPSF2, CFT2 cleavage and polyadenylation specificity factor subunit 2, at 562,585 to 566,021 9915 mRNA_1548: 9916 - K07937 ARF1 ADP-ribosylation factor 1, at 566,553 to 567,814 9916

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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562,082 - 9914 mRNA_1546 0.87 +1.3
562,104 - 9914 mRNA_1546 0.88 +0.8
562,407 - +0.5
562,518 + +0.1
565,556 - 9915 mRNA_1547 0.86 +0.4
566,499 + +0.1
566,504 + -0.5
566,507 + -0.3

Or see this region's nucleotide sequence