Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1565

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9933 and 9934 are separated by 834 nucleotides mRNA_1565: 9933 - KOG1860 Nuclear protein export factor, at 604,614 to 609,512 9933 mRNA_1566: 9934 - Hypothetical Protein, at 610,347 to 612,663 9934

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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603,676 + +1.2
603,816 - +0.5
603,909 + +1.0
604,112 + +0.3
604,385 - +0.1
604,470 - +0.8
604,472 + +0.2
604,513 + -0.0
609,600 + +1.3
609,605 - +0.4
609,606 - +1.1
609,611 + +0.5
609,612 + -0.5
609,613 - -0.5
609,619 - +0.4
609,770 - -0.7
609,782 + -1.2
609,788 - +0.0
609,806 - +0.1
609,907 - +0.4
609,918 + +0.3
609,936 - -0.0
609,946 + +0.3
609,948 + +1.1
609,968 + +0.2
610,067 + +0.8
610,069 - +2.8
610,075 - +0.5
610,083 + +0.1
610,227 + -0.0
610,264 + +0.6
610,265 + -0.3
610,375 - -0.1
610,376 + -1.5

Or see this region's nucleotide sequence