Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1592

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9959 and 9960 are separated by 550 nucleotides mRNA_1591: 9959 - K01835 pgm phosphoglucomutase, at 673,406 to 675,711 9959 mRNA_1592: 9960 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 676,262 to 677,615 9960

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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675,268 + 9959 mRNA_1591 0.81 +0.8
675,678 + +1.0
675,821 - +0.6
675,829 - +0.5
675,847 - +0.3
675,901 + +0.2
675,995 + +0.7
676,002 + +1.4
676,003 - -0.2
676,016 + +2.1
676,115 - +2.2
676,116 - -0.8
676,120 - +0.1
676,135 - +0.7
676,909 - 9960 mRNA_1592 0.48 -0.1
676,913 + 9960 mRNA_1592 0.48 -0.0
676,926 + 9960 mRNA_1592 0.49 +0.7
677,074 + 9960 mRNA_1592 0.60 -0.6
677,086 + 9960 mRNA_1592 0.61 +0.2
677,323 + 9960 mRNA_1592 0.78 +1.6
677,801 + +0.5
678,370 - +0.6
678,513 + +0.4
678,535 - +0.3
678,541 + +0.4
678,550 - +0.6
678,560 + +1.1
678,571 - +1.2
678,583 + +0.4
678,588 + -0.2

Or see this region's nucleotide sequence