Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1609

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1609: 9977 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 712,765 to 713,275 9977

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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711,835 + +1.5
711,840 + -0.1
711,841 - +0.3
711,871 + +0.2
711,888 - +0.7
711,950 + -0.2
712,007 - +0.5
712,142 - +0.5
712,757 - +1.7
712,853 - 9977 mRNA_1609 0.17 +0.2
713,036 - 9977 mRNA_1609 0.53 +0.2
713,046 + 9977 mRNA_1609 0.55 +1.1
713,058 + 9977 mRNA_1609 0.57 +0.1
713,218 - 9977 mRNA_1609 0.89 -0.9
713,305 + +0.6
713,310 - +0.7
713,363 + -0.5
714,074 + +0.4

Or see this region's nucleotide sequence