Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1656

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10023 and 10024 are separated by 121 nucleotides10024 and 10025 are separated by 489 nucleotides mRNA_1655: 10023 - HMMPfam-PQ loop repeat-PF04193,SMART-Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.-SM00679, at 819,421 to 820,962 10023 mRNA_1656: 10024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 821,084 to 822,700 10024 mRNA_1657: 10025 - K08286 E2.7.11.- protein-serine/threonine kinase, at 823,190 to 825,684 10025

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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820,282 + 10023 mRNA_1655 0.56 +0.4
820,577 - 10023 mRNA_1655 0.75 -0.1
820,706 - 10023 mRNA_1655 0.83 -0.2
820,713 + 10023 mRNA_1655 0.84 -2.3
820,718 - 10023 mRNA_1655 0.84 -0.2
820,720 - 10023 mRNA_1655 0.84 +0.4
820,861 - +0.5
820,862 + -0.8
821,020 + -2.5
821,031 + -0.6
821,036 + -0.0
821,038 - +1.0
821,040 + +0.2
821,047 + +0.4
821,191 - -0.5
822,768 - -0.5
822,774 + +0.1
822,783 + -0.3
822,790 - -0.2
822,916 + -0.6
822,918 - +0.0
822,925 + +1.4
822,933 - -0.6
823,236 + -0.5

Or see this region's nucleotide sequence