Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1692

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10060 and 10061 are separated by 259 nucleotides mRNA_1692: 10060 - K20292 COG5 conserved oligomeric Golgi complex subunit 5, at 908,144 to 911,524 10060 mRNA_1693: 10061 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 911,784 to 914,454 10061

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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907,279 + +0.9
907,439 + -0.2
907,724 + +0.3
907,743 - +0.2
907,886 + +0.3
908,047 - +0.3
908,054 + -0.1
908,328 - -1.5
908,586 - 10060 mRNA_1692 0.13 -0.1
908,645 + 10060 mRNA_1692 0.15 -0.2
908,906 + 10060 mRNA_1692 0.23 -1.0
908,944 + 10060 mRNA_1692 0.24 -0.5
909,024 - 10060 mRNA_1692 0.26 -0.1
909,218 - 10060 mRNA_1692 0.32 -0.1
909,222 + 10060 mRNA_1692 0.32 +0.1
909,376 + 10060 mRNA_1692 0.36 -0.9
909,807 + 10060 mRNA_1692 0.49 -0.9
909,964 - 10060 mRNA_1692 0.54 -0.1
910,243 - 10060 mRNA_1692 0.62 -0.7
910,353 + 10060 mRNA_1692 0.65 -0.2
910,368 + 10060 mRNA_1692 0.66 -0.4
910,478 + 10060 mRNA_1692 0.69 -0.5
910,516 + 10060 mRNA_1692 0.70 -0.7
910,700 - 10060 mRNA_1692 0.76 -0.9
911,151 - 10060 mRNA_1692 0.89 -1.1
911,463 + -0.7
911,592 - -0.5
911,622 + +0.1
911,635 - -0.0
911,773 + +0.6
911,777 + +1.0
911,933 - -0.7
911,999 - +0.6
912,026 - -0.5
912,307 + 10061 mRNA_1693 0.20 +0.2
912,451 - 10061 mRNA_1693 0.25 +0.8

Or see this region's nucleotide sequence