Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1703

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10071 and 10072 are separated by 750 nucleotides mRNA_1703: 10071 - SUPERFAMILY--SSF49764, at 933,150 to 935,625 10071 mRNA_1704: 10072 - K17777 TIM9 mitochondrial import inner membrane translocase subunit TIM9, at 936,376 to 936,792 10072

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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932,206 + +1.5
932,220 - +0.9
932,230 + -0.7
932,348 - +0.7
932,352 + +0.8
932,360 + -0.6
932,365 + -0.1
932,388 - -0.3
932,396 - -0.1
932,499 + -1.5
932,500 - +1.1
932,500 + +0.2
932,504 - +0.5
932,510 - -0.1
932,514 + -0.8
932,520 + +1.0
932,520 - +0.2
932,527 - -0.5
932,530 - +0.0
932,531 + +0.2
932,531 + -0.2
932,539 - -0.6
932,539 + -0.6
932,540 + -0.4
932,549 + +0.4
932,558 - -0.2
932,663 + +0.2
932,668 + -0.9
932,671 - +1.6
932,672 + +0.8
932,673 + -0.9
932,676 - +0.7
932,690 - -0.0
932,697 + -0.8
932,697 - -0.6
932,712 - -0.1
932,717 + -1.2
932,826 + -1.5
932,827 - -1.0
932,830 - +0.5
932,831 - -0.2
932,835 - +0.8
932,837 + -0.3
932,850 + +0.1
932,854 + -1.1
932,875 - -0.3
932,875 + +0.2
932,877 - -0.8
932,881 - -0.1
932,882 - +0.8
932,893 - +0.5
932,905 + +0.4
932,910 - -0.5
932,930 - -0.3
932,945 + +1.4
932,969 - +0.1
932,991 - -0.8
932,992 + -0.1
932,993 + +1.0
933,006 + -0.5
933,015 - -0.5
933,018 - +0.7
933,024 - -0.7
933,034 + +0.1
933,058 + -0.8
933,063 + -1.5
933,076 + +0.2
933,081 - -0.0
933,087 - +0.0
933,088 - -0.1
933,095 + +0.3
933,111 - +0.4
933,114 - -0.5
933,116 - +0.8
933,119 + +0.4
933,130 - -0.6
933,133 - -1.2
933,140 + -0.4
933,145 + +0.2
933,147 - +0.4
933,152 + +2.1
933,160 + -0.6
933,164 + +1.3
933,169 - +0.4
933,177 - +0.5
933,179 + -0.3
933,265 - +1.3
933,288 + +1.1
933,290 + -0.5
933,298 + -0.7
933,427 - 10071 mRNA_1703 0.11 +0.0
933,573 - 10071 mRNA_1703 0.17 -0.5
933,603 - 10071 mRNA_1703 0.18 +2.3
933,740 + 10071 mRNA_1703 0.24 +0.1
933,755 - 10071 mRNA_1703 0.24 +0.4
933,760 + 10071 mRNA_1703 0.25 +0.9
933,853 - 10071 mRNA_1703 0.28 +1.5
933,857 + 10071 mRNA_1703 0.29 -0.3
934,147 + 10071 mRNA_1703 0.40 +0.2
934,155 - 10071 mRNA_1703 0.41 +0.5
934,481 - 10071 mRNA_1703 0.54 +0.1
934,575 + 10071 mRNA_1703 0.58 -1.3
934,613 + 10071 mRNA_1703 0.59 -0.1
934,632 - 10071 mRNA_1703 0.60 -0.2
934,633 + 10071 mRNA_1703 0.60 -0.1
934,670 + 10071 mRNA_1703 0.61 -0.5
934,747 + 10071 mRNA_1703 0.64 -0.3
935,157 + 10071 mRNA_1703 0.81 -0.5
935,467 + -1.5
935,471 - +0.0
935,471 - -1.0
935,471 + -0.3
935,491 + -0.2
935,504 - +0.0
935,660 + +1.8
935,684 + +0.6
935,790 - +0.5
935,919 + +1.4
935,938 - -0.5
935,945 - -0.6
935,968 - +0.8
936,061 + +1.1
936,214 + +0.4

Or see this region's nucleotide sequence