Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1740

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10107 and 10108 are separated by 309 nucleotides mRNA_1739: 10107 - Hypothetical Protein, at 84,456 to 87,207 10107 mRNA_1740: 10108 - K20828 ZNF143_76, STAF zinc finger protein 143/76, at 87,517 to 89,814 10108

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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87,152 - -0.5
87,316 + +0.4
87,317 - -1.6
87,511 - +1.8
87,749 + 10108 mRNA_1740 0.10 -0.6
87,874 + 10108 mRNA_1740 0.16 -1.3
87,918 + 10108 mRNA_1740 0.17 -1.0
87,935 + 10108 mRNA_1740 0.18 -0.1
88,035 + 10108 mRNA_1740 0.23 -0.0
88,201 - 10108 mRNA_1740 0.30 -0.3
88,489 + 10108 mRNA_1740 0.42 -0.0
88,513 + 10108 mRNA_1740 0.43 -0.2
88,775 - 10108 mRNA_1740 0.55 +0.3
88,796 + 10108 mRNA_1740 0.56 +0.8
89,390 - 10108 mRNA_1740 0.82 -0.7
89,477 + 10108 mRNA_1740 0.85 -1.1
89,778 - -0.1
89,930 - -1.4
90,072 - +1.6
90,079 + -0.2
90,237 - -0.7
90,375 + -1.3
90,397 - +0.1
90,431 + +0.1
90,485 - +0.5
90,521 - -0.4
90,526 - -0.3
90,536 + -1.4
90,541 + -0.4
90,661 - -0.1
90,663 + +0.7
90,677 - +0.0
90,680 - -1.4
90,681 - -0.1

Or see this region's nucleotide sequence