Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1807

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1807: 10175 - K09403 FOXJ2_3 forkhead box protein J2/3, at 251,136 to 255,270 10175

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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250,196 + -1.7
250,201 - -0.4
250,202 - -0.9
250,206 + +0.3
250,336 - -0.2
250,337 + -0.8
250,365 + +1.6
250,494 - +0.0
250,529 - +0.6
250,628 - -0.4
250,642 + -0.8
250,655 - -0.8
250,661 + -0.1
250,661 + -1.1
250,666 - +0.2
250,667 - -1.0
250,669 - +0.1
250,671 + -0.3
250,671 - +0.1
250,671 - -0.8
250,672 - +0.2
250,672 + -2.5
250,676 + +0.3
250,676 + +0.1
250,693 - +0.5
250,693 + -1.0
250,693 + -1.2
250,705 - -0.1
250,706 + -0.9
250,721 - +0.6
250,820 - -0.8
250,824 + +0.6
250,836 + -0.3
250,858 + +0.4
250,871 + +0.3
250,888 - -0.7
250,891 + +0.1
250,938 + +0.0
250,943 - -1.9
250,946 + -0.7
250,949 - +1.0
250,957 - +0.2
250,957 - -1.9
250,976 - -0.7
250,977 - -0.7
250,983 + +0.2
250,984 + -0.4
250,985 + -1.5
250,985 - -0.4
250,987 + -0.0
250,992 - -0.4
251,021 - +1.0
251,027 - -1.1
251,030 + +0.1
251,100 - -1.6
251,106 + -0.0
251,154 - +0.2
251,162 + -0.3
251,171 + -0.3
251,171 - +0.9
251,195 + -1.1
251,291 - -0.5
251,340 + +0.5
252,310 - 10175 mRNA_1807 0.28 -0.6
252,310 - 10175 mRNA_1807 0.28 +0.6
252,629 + 10175 mRNA_1807 0.36 -0.6
252,931 + 10175 mRNA_1807 0.43 +0.8
252,949 - 10175 mRNA_1807 0.44 +0.8
252,969 - 10175 mRNA_1807 0.44 +0.6
253,050 - 10175 mRNA_1807 0.46 +0.5
253,200 + 10175 mRNA_1807 0.50 +1.8
253,505 + 10175 mRNA_1807 0.57 -0.4
253,671 - 10175 mRNA_1807 0.61 +0.6
253,790 - 10175 mRNA_1807 0.64 -1.5
253,820 + 10175 mRNA_1807 0.65 -1.5
253,905 + 10175 mRNA_1807 0.67 -0.4
254,150 + 10175 mRNA_1807 0.73 -1.2
254,237 - 10175 mRNA_1807 0.75 +1.3
254,524 - 10175 mRNA_1807 0.82 +0.0
254,542 + 10175 mRNA_1807 0.82 -0.4
254,546 + 10175 mRNA_1807 0.82 +0.7
254,567 - 10175 mRNA_1807 0.83 +1.1
254,950 - -0.7
255,085 + -1.1
255,404 - -0.0
255,419 + +0.6
255,426 + +0.3
255,527 + -0.0
255,681 - -0.2
255,847 - -1.1
255,853 - -0.3
255,854 - +0.7
255,862 + -1.0
255,866 - +1.2
255,880 - +0.6
255,997 - +0.2
256,043 + -0.2
256,161 - +0.4

Or see this region's nucleotide sequence