Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1816

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10183 and 10184 are separated by 739 nucleotides10184 and 10185 are separated by 357 nucleotides mRNA_1815: 10183 - K20777 EXD2 exonuclease 3'-5' domain-containing protein 2, at 280,165 to 281,761 10183 mRNA_1816: 10184 - K08178 JEN MFS transporter, SHS family, lactate transporter, at 282,501 to 284,889 10184 mRNA_1817: 10185 - HMMPfam-Ring finger domain-PF13639,ProSitePatterns-EGF-like domain signature 1.-PS00022,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966,SUPERFAMILY--SSF57850, at 285,247 to 286,558 10185

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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281,657 - -0.3
281,659 - -1.5
281,661 - -2.2
281,682 + +0.6
281,748 + -0.1
281,762 - +0.2
281,784 - +1.5
281,785 + -0.8
281,803 - -0.1
281,808 - -0.4
281,810 + +0.1
281,826 - +0.6
281,827 + +0.2
281,859 - -0.3
281,896 + -1.6
281,935 + -0.7
281,950 + -0.4
281,978 - -1.1
281,981 + -0.1
282,003 - -1.3
282,004 + -0.3
282,008 - -1.7
282,015 + +0.5
282,019 - -2.2
282,025 + +0.4
282,040 + -0.6
282,076 + -0.6
282,184 + +0.2
282,195 - +0.6
282,209 + -0.4
282,212 + -0.7
282,215 - +0.1
282,240 + -0.1
282,242 - +0.5
282,280 + +0.1
282,282 + -0.9
282,287 + -0.6
282,306 - +0.2
282,310 + +0.7
282,352 - -0.1
282,352 + +0.0
282,355 - -0.6
282,360 + +0.6
282,361 + -2.7
282,361 - -1.5
282,362 - +0.0
282,364 - +0.3
282,364 + +1.6
282,364 - +1.0
282,375 - -0.6
282,381 + +0.6
282,382 + -0.1
282,387 - -0.7
282,395 + +0.0
282,397 + -0.1
282,401 - -0.0
282,418 - +0.0
282,439 - +1.8
282,522 + +0.1
282,532 + +0.2
282,569 + -0.0
282,579 + -0.5
282,678 - +0.3
282,887 - 10184 mRNA_1816 0.16 +0.0
283,251 - 10184 mRNA_1816 0.31 +0.5
283,858 - 10184 mRNA_1816 0.57 +0.0
283,883 - 10184 mRNA_1816 0.58 +0.0
284,062 - 10184 mRNA_1816 0.65 -0.8
284,484 - 10184 mRNA_1816 0.83 -0.5
284,620 + 10184 mRNA_1816 0.89 -0.2
284,916 - -0.0
284,925 + -0.2
285,737 + 10185 mRNA_1817 0.37 -1.5

Or see this region's nucleotide sequence