Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1823

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10191 and 10192 are separated by 294 nucleotides mRNA_1823: 10191 - KOG3783 Uncharacterized conserved protein, at 298,528 to 301,287 10191 mRNA_1824: 10192 - Hypothetical Protein, at 301,582 to 303,988 10192

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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297,541 - -0.6
297,551 - +0.7
297,554 + -0.2
297,559 + +0.3
297,610 - +0.6
297,618 - -0.1
297,637 - +0.3
297,642 - -0.6
297,645 + +0.4
297,817 + -1.2
297,961 - +1.8
298,075 - +0.6
298,095 - -0.4
298,112 - -1.5
298,257 + -0.3
298,430 + -0.9
298,598 - -0.2
298,772 - +0.1
298,853 + 10191 mRNA_1823 0.12 -1.4
299,069 + 10191 mRNA_1823 0.20 -0.2
299,138 + 10191 mRNA_1823 0.22 +0.1
299,727 - 10191 mRNA_1823 0.43 -0.1
300,005 + 10191 mRNA_1823 0.54 +1.6
300,183 - 10191 mRNA_1823 0.60 -0.2
300,406 + 10191 mRNA_1823 0.68 +0.1
300,864 + 10191 mRNA_1823 0.85 +1.5
300,926 - 10191 mRNA_1823 0.87 -1.2
301,161 + -0.4
301,201 + -1.2
301,314 + -0.1
301,325 - -0.8
301,336 - -0.5
301,475 - +0.9
301,485 + +0.2
301,503 - -2.0
301,504 - -0.5
301,505 + -0.6
301,510 - -0.8
301,608 - +0.1
301,649 - +0.7
301,665 + -0.3
301,682 + -0.8

Or see this region's nucleotide sequence