Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1924

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10291 and 10292 are separated by 222 nucleotides10292 and 10293 are separated by 166 nucleotides mRNA_1923: 10291 - K19787 CARNMT1 carnosine N-methyltransferase, at 519,459 to 521,071 10291 mRNA_1924: 10292 - K00763 pncB, NAPRT1 nicotinate phosphoribosyltransferase, at 521,294 to 523,495 10292 mRNA_1925: 10293 - K13239 PECI peroxisomal 3,2-trans-enoyl-CoA isomerase, at 523,662 to 525,143 10293

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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520,403 + 10291 mRNA_1923 0.59 -0.5
520,562 + 10291 mRNA_1923 0.68 -0.1
520,961 - +1.0
520,987 + +0.5
521,109 - +0.8
521,119 + -0.8
521,123 - +0.5
521,274 + -0.2
521,278 + +0.8
521,286 + +0.2
521,318 + +0.7
521,432 + +1.1
521,435 - -1.0
521,482 + -0.0
521,567 - 10292 mRNA_1924 0.12 +0.3
521,726 - 10292 mRNA_1924 0.20 -0.7
521,727 - 10292 mRNA_1924 0.20 -0.1
521,757 + 10292 mRNA_1924 0.21 +0.7
521,995 + 10292 mRNA_1924 0.32 +0.7
522,569 + 10292 mRNA_1924 0.58 -0.6
522,744 + 10292 mRNA_1924 0.66 -0.8
523,142 - 10292 mRNA_1924 0.84 +0.6
523,148 + 10292 mRNA_1924 0.84 +0.5
523,304 + -0.1
523,423 + -1.2
523,585 - -0.5
523,935 + 10293 mRNA_1925 0.18 +0.0
524,175 + 10293 mRNA_1925 0.35 -0.5
524,320 - 10293 mRNA_1925 0.44 +0.4

Or see this region's nucleotide sequence