Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1948

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10316 and 10317 are separated by 491 nucleotides mRNA_1948: 10316 - K08176 PHO84 MFS transporter, PHS family, inorganic phosphate transporter, at 580,409 to 582,858 10316 mRNA_1949: 10317 - KOG0254 Predicted transporter (major facilitator superfamily), at 583,350 to 585,589 10317

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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579,452 - -1.5
579,452 - +0.4
579,482 + -0.1
579,539 - -0.5
579,593 + +0.3
579,609 + -0.2
579,661 + +0.0
579,704 - -1.4
579,717 - -0.2
579,729 - +1.7
579,729 - -0.4
579,735 - -1.8
579,742 - +0.3
579,746 - +0.3
579,755 - +0.5
579,780 - +0.5
579,782 + -0.2
579,783 + -0.9
579,797 + -0.2
579,816 + +0.0
579,830 + +0.7
579,849 - +0.2
579,868 - +0.8
579,870 - +1.0
579,882 - -0.2
579,887 + +1.9
579,887 + -1.2
579,890 - -0.6
579,899 + +0.7
579,900 + +0.4
579,906 + -0.5
579,912 + -0.2
579,976 - -0.8
579,990 - -0.0
579,990 + +1.0
579,990 + +0.8
579,991 - -0.5
579,991 - -1.0
579,991 - +0.5
580,006 - +0.1
580,010 - +0.1
580,011 + -0.5
580,012 + -2.8
580,014 - +0.5
580,015 - +0.3
580,020 + +0.2
580,035 - +1.2
580,039 + +0.0
580,040 + -0.4
580,042 - +0.1
580,051 - +0.8
580,179 - -0.5
580,180 - +0.0
580,185 - +0.2
580,185 + -0.5
580,195 - -0.8
580,197 - -0.3
580,199 - -0.9
580,204 + +1.3
580,210 + +0.3
580,224 - +0.2
580,332 + +0.4
580,358 - -0.3
580,920 - 10316 mRNA_1948 0.21 +0.9
580,972 + 10316 mRNA_1948 0.23 -0.2
581,211 - 10316 mRNA_1948 0.33 +0.1
581,300 - 10316 mRNA_1948 0.36 -0.4
581,357 + 10316 mRNA_1948 0.39 -0.7
581,363 - 10316 mRNA_1948 0.39 +0.6
581,399 + 10316 mRNA_1948 0.40 +0.0
581,519 + 10316 mRNA_1948 0.45 -0.2
581,751 - 10316 mRNA_1948 0.55 -1.5
581,783 - 10316 mRNA_1948 0.56 -0.2
581,890 - 10316 mRNA_1948 0.60 -1.2
581,960 + 10316 mRNA_1948 0.63 -0.1
582,339 + 10316 mRNA_1948 0.79 -0.3
582,858 + -1.4
582,866 + +0.6
582,871 - -0.0
582,882 + -1.2
583,075 + +0.4
583,127 - +1.4
583,402 + +1.6
583,847 + 10317 mRNA_1949 0.22 +2.5

Or see this region's nucleotide sequence