Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1997

Experiment: 40 hrs High Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10364 and 10365 are separated by 600 nucleotides10365 and 10366 are separated by 487 nucleotides mRNA_1996: 10364 - KOG0379 Kelch repeat-containing proteins, at 700,597 to 701,909 10364 mRNA_1997: 10365 - KOG0627 Heat shock transcription factor, at 702,510 to 703,691 10365 mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704,179 to 706,336 10366

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
remove
701,862 - -0.0
701,888 - -0.8
701,905 - -1.6
701,921 + +1.1
701,926 + -0.6
701,961 - -0.0
701,988 + -0.9
702,084 - -0.4
702,089 - -0.0
702,091 + -0.9
702,234 - -1.2
702,236 - -0.4
702,243 - -1.7
702,274 + -0.4
702,282 + -0.7
702,309 - -0.1
702,333 - +0.0
702,341 - -0.0
702,354 + -0.9
702,364 + -0.5
702,365 - -0.2
702,368 + -0.7
702,380 + -0.0
702,384 + +1.7
702,408 + -1.2
702,481 + -0.7
702,500 - +0.3
703,819 + -1.5
703,907 - +0.2
703,919 - -2.2
704,071 - +0.0
704,098 - -0.3
704,101 + +1.7
704,114 + +0.1
704,249 - -0.5
704,254 + -0.2
704,296 - -1.1
704,544 - 10366 mRNA_1998 0.17 -0.4
704,554 + 10366 mRNA_1998 0.17 -0.4
704,565 - 10366 mRNA_1998 0.18 +1.5
704,672 - 10366 mRNA_1998 0.23 -0.2

Or see this region's nucleotide sequence