Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2006

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10373 and 10374 are separated by 527 nucleotides10374 and 10375 are separated by 238 nucleotides mRNA_2005: 10373 - K08286 E2.7.11.- protein-serine/threonine kinase, at 720,750 to 723,688 10373 mRNA_2006: 10374 - K00380 cysJ sulfite reductase (NADPH) flavoprotein alpha-component, at 724,216 to 728,973 10374 mRNA_2007: 10375 - K15331 TRMT2B, TRM2 tRNA (uracil-5-)-methyltransferase, at 729,212 to 731,398 10375

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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723,328 - 10373 mRNA_2005 0.88 -0.2
723,454 + -0.5
723,485 - -1.3
723,496 - -1.0
723,500 + -0.1
723,594 - +0.0
723,628 + +0.2
723,648 - -0.1
723,650 + +1.8
723,655 + -0.3
723,755 - +0.1
723,760 + +0.0
723,768 - -1.4
723,768 - -0.3
723,777 - +0.7
723,778 + +1.0
723,781 + +0.0
723,829 + +0.1
723,838 + -1.4
723,843 - -0.3
723,852 + -0.4
723,862 + -1.8
723,863 - +1.3
723,993 - +1.8
723,997 - +1.3
724,061 + -1.9
724,068 - +1.0
724,073 + +0.0
724,101 + -0.6
724,111 - +0.5
724,195 - -0.6
724,208 - -0.3
724,213 - -0.3
724,226 - -0.1
724,229 + +1.9
724,233 - -1.3
724,235 + +0.1
724,245 - +0.1
724,247 - +1.4
724,518 - -1.2
724,547 + -0.6
724,575 + -0.6
724,786 - 10374 mRNA_2006 0.12 -0.8
725,233 - 10374 mRNA_2006 0.21 +0.2
725,373 + 10374 mRNA_2006 0.24 +0.0
725,523 - 10374 mRNA_2006 0.27 +1.0
725,561 - 10374 mRNA_2006 0.28 -2.1
725,669 + 10374 mRNA_2006 0.31 -0.7
725,785 + 10374 mRNA_2006 0.33 -1.8
725,901 - 10374 mRNA_2006 0.35 +0.2
725,969 - 10374 mRNA_2006 0.37 -0.4
726,098 + 10374 mRNA_2006 0.40 -0.6
726,186 + 10374 mRNA_2006 0.41 -0.7
726,462 + 10374 mRNA_2006 0.47 +0.6
726,934 + 10374 mRNA_2006 0.57 +0.0
727,182 - 10374 mRNA_2006 0.62 -0.3
727,190 + 10374 mRNA_2006 0.63 -0.6
727,742 - 10374 mRNA_2006 0.74 -0.3
727,836 + 10374 mRNA_2006 0.76 -1.2
728,149 + 10374 mRNA_2006 0.83 -0.1
728,685 + -0.1
729,222 - +0.6
729,249 + -0.3
729,263 + -2.1
729,315 + -0.1
729,355 - -0.0
729,459 + 10375 mRNA_2007 0.11 -1.4
729,763 + 10375 mRNA_2007 0.25 -0.9
729,888 - 10375 mRNA_2007 0.31 -0.1

Or see this region's nucleotide sequence