Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2048

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10415 and 10416 are separated by 348 nucleotides10416 and 10417 are separated by 710 nucleotides mRNA_2047: 10415 - HMMPfam-Spo12 family-PF05032, at 830,118 to 830,933 10415 mRNA_2048: 10416 - Hypothetical Protein, at 831,282 to 832,133 10416 mRNA_2049: 10417 - K07565 NIP7 60S ribosome subunit biogenesis protein NIP7, at 832,844 to 834,374 10417

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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830,939 + -0.9
831,203 - +0.7
831,209 + +1.5
831,320 + -0.5
831,321 - -0.9
831,331 - -2.3
831,372 - 10416 mRNA_2048 0.11 -0.3
831,448 - 10416 mRNA_2048 0.19 -0.1
831,516 - 10416 mRNA_2048 0.27 +1.6
831,649 + 10416 mRNA_2048 0.43 +0.2
831,678 + 10416 mRNA_2048 0.46 -0.2
831,729 + 10416 mRNA_2048 0.52 -0.3
831,798 - 10416 mRNA_2048 0.61 -0.0
832,078 + -0.7
832,081 - +0.5
832,216 - -1.0
832,220 - -1.0
832,661 - -2.4
832,845 - -0.2

Or see this region's nucleotide sequence