Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2082

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10449 and 10450 are separated by 333 nucleotides mRNA_2081: 10449 - BLAST 163.m06341p [Cryptococcus neoformans], at 25,578 to 27,560 10449 mRNA_2082: 10450 - Hypothetical Protein, at 27,894 to 29,242 10450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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27,021 + 10449 mRNA_2081 0.73 +0.3
27,045 + 10449 mRNA_2081 0.74 +0.1
27,196 - 10449 mRNA_2081 0.82 +0.5
27,445 - -1.3
27,469 - -0.1
27,480 + -0.5
27,512 + -1.2
27,564 + +1.3
27,623 - -0.6
27,624 - -0.6
27,741 + -0.3
27,745 - +1.8
27,752 - +1.4
27,791 + -0.2
27,813 - +1.3
27,818 + -2.1
27,828 + +0.2
27,910 - +0.0
27,987 - +0.1
28,096 + 10450 mRNA_2082 0.15 -0.6
28,099 - 10450 mRNA_2082 0.15 +0.1
28,258 + 10450 mRNA_2082 0.27 +0.3
28,415 - 10450 mRNA_2082 0.39 -0.9
28,553 - 10450 mRNA_2082 0.49 +0.7
28,789 - 10450 mRNA_2082 0.66 -0.5
28,953 - 10450 mRNA_2082 0.79 +0.2
29,113 - +0.4
29,256 + -0.3
29,512 + +0.5
29,516 - -1.0
29,525 - -0.6
29,526 + +0.1
29,530 + +0.1
29,532 - -0.2
29,535 - +0.4
29,551 - -1.3
29,700 - -1.1
29,708 + -0.1
29,710 + -1.1
29,711 + -0.3
29,738 + -2.6
29,818 - +0.7
29,851 + -1.0
29,867 + +1.2
29,886 - -1.9

Or see this region's nucleotide sequence