Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2163

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10530 and 10531 are separated by 233 nucleotides10531 and 10532 are separated by 200 nucleotides mRNA_2162: 10530 - K15027 EIF2D translation initiation factor 2D, at 223,612 to 225,989 10530 mRNA_2163: 10531 - K18468 VPS35 vacuolar protein sorting-associated protein 35, at 226,223 to 229,992 10531 mRNA_2164: 10532 - K10736 MCM10 minichromosome maintenance protein 10, at 230,193 to 233,259 10532

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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225,766 + -0.1
225,888 - +1.0
225,920 + +0.4
226,067 - -1.2
226,080 - +0.3
226,221 + +1.1
230,256 - -1.2
230,306 + -0.1
230,563 - 10532 mRNA_2164 0.12 -0.6
230,634 + 10532 mRNA_2164 0.14 +0.1
230,657 - 10532 mRNA_2164 0.15 -0.9

Or see this region's nucleotide sequence