Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2174

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10541 and 10542 are separated by 452 nucleotides10542 and 10543 are separated by 293 nucleotides mRNA_2173: 10541 - K03950 NDUFA6 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6, at 252,684 to 253,574 10541 mRNA_2174: 10542 - K14009 BCAP31, BAP31 B-cell receptor-associated protein 31, at 254,027 to 255,180 10542 mRNA_2175: 10543 - HMMPfam-Mus7/MMS22 family-PF09462, at 255,474 to 261,372 10543

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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253,488 - -2.1
253,623 + -0.0
254,393 + 10542 mRNA_2174 0.32 +0.3
254,503 - 10542 mRNA_2174 0.41 +0.5
254,530 + 10542 mRNA_2174 0.44 +0.7
254,560 - 10542 mRNA_2174 0.46 -0.5
254,566 - 10542 mRNA_2174 0.47 -1.2
254,705 + 10542 mRNA_2174 0.59 -0.5
254,779 - 10542 mRNA_2174 0.65 -0.3
254,932 + 10542 mRNA_2174 0.78 -1.2
254,933 - 10542 mRNA_2174 0.79 +0.6
254,938 - 10542 mRNA_2174 0.79 -0.8
254,946 + 10542 mRNA_2174 0.80 +2.1
254,955 + 10542 mRNA_2174 0.80 +0.0
255,100 - +1.1
255,208 + +0.2
255,246 - -1.0
255,251 + +2.1
255,281 - -1.2
255,415 - +0.1
255,845 - -0.2

Or see this region's nucleotide sequence