Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2182

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10550 and 10551 are separated by 357 nucleotides mRNA_2182: 10550 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 282,735 to 284,065 10550 mRNA_2183: 10551 - K00059 fabG 3-oxoacyl-[acyl-carrier protein] reductase, at 284,423 to 286,019 10551

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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281,748 + +1.0
281,795 - -0.2
281,801 - -0.0
281,924 - +1.5
282,256 + +0.7
282,373 - +1.4
282,379 + -0.5
282,389 - -2.3
282,515 - +0.0
282,651 - +1.0
282,663 + +1.6
282,666 - -0.2
282,677 + -1.2
282,686 + -0.2
282,810 + -1.0
282,927 + 10550 mRNA_2182 0.14 -0.2
282,950 + 10550 mRNA_2182 0.16 +0.0
283,092 - 10550 mRNA_2182 0.27 +0.3
284,083 + -0.4
284,121 - -0.0
284,124 + -0.8
284,251 + -0.8
284,973 - 10551 mRNA_2183 0.34 -0.9
284,978 - 10551 mRNA_2183 0.35 +0.1

Or see this region's nucleotide sequence