Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2195

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10563 and 10564 are separated by 316 nucleotides mRNA_2195: 10563 - HMMPfam-Subtilase family-PF00082,HMMPfam-PA domain-PF02225,HMMPfam-Fn3-like domain (DUF1034)-PF06280,PRINTS-Subtilisin serine protease family (S8) signature-PR00723,ProSitePatterns-Serine proteases, subtilase family, aspartic acid active site.-PS00136,ProSitePatterns-Serine proteases, subtilase family, histidine active site.-PS00137,SUPERFAMILY--SSF52025,SUPERFAMILY--SSF52743, at 319,466 to 323,008 10563 mRNA_2196: 10564 - HMMPfam-Bromodomain associated-PF07524, at 323,325 to 326,120 10564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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318,739 - +0.4
318,774 + -0.2
318,978 + +1.1
319,016 + -1.3
319,059 + +0.4
319,069 + +1.1
319,172 + +0.5
319,175 - +1.1
319,213 - -1.9
319,261 - -2.0
319,268 - -1.0
319,277 + +0.5
319,286 - -0.1
319,321 - +1.0
319,347 - -1.6
319,357 + +1.1
319,369 + -0.5
319,401 + -2.5
319,403 - -0.3
319,481 + +0.2
319,628 - -1.1
319,790 + +1.5
319,911 + 10563 mRNA_2195 0.13 -0.2
319,941 + 10563 mRNA_2195 0.13 +1.9
319,965 + 10563 mRNA_2195 0.14 -1.4
320,051 - 10563 mRNA_2195 0.17 -0.3
320,089 + 10563 mRNA_2195 0.18 +0.8
320,243 + 10563 mRNA_2195 0.22 -0.5
320,409 + 10563 mRNA_2195 0.27 -0.3
320,526 - 10563 mRNA_2195 0.30 +1.3
320,577 - 10563 mRNA_2195 0.31 -1.7
320,627 + 10563 mRNA_2195 0.33 -1.6
320,644 - 10563 mRNA_2195 0.33 -0.9
320,700 - 10563 mRNA_2195 0.35 +0.9
320,700 + 10563 mRNA_2195 0.35 +1.7
320,802 + 10563 mRNA_2195 0.38 -0.7
320,811 + 10563 mRNA_2195 0.38 +1.3
320,870 - 10563 mRNA_2195 0.40 -0.8
321,251 - 10563 mRNA_2195 0.50 -0.3
321,261 + 10563 mRNA_2195 0.51 +0.3
321,271 + 10563 mRNA_2195 0.51 +0.3
321,390 + 10563 mRNA_2195 0.54 -0.2
321,411 + 10563 mRNA_2195 0.55 -0.2
321,569 + 10563 mRNA_2195 0.59 +0.6
321,588 - 10563 mRNA_2195 0.60 -0.2
321,762 - 10563 mRNA_2195 0.65 -0.1
321,854 + 10563 mRNA_2195 0.67 +0.3
321,877 + 10563 mRNA_2195 0.68 +0.1
321,877 + 10563 mRNA_2195 0.68 -2.1
321,880 + 10563 mRNA_2195 0.68 +1.8
321,883 - 10563 mRNA_2195 0.68 -0.2
321,917 - 10563 mRNA_2195 0.69 -0.2
321,988 - 10563 mRNA_2195 0.71 -0.5
322,060 + 10563 mRNA_2195 0.73 -0.8
322,064 + 10563 mRNA_2195 0.73 -0.6
322,151 - 10563 mRNA_2195 0.76 +2.2
322,222 - 10563 mRNA_2195 0.78 -2.3
322,313 - 10563 mRNA_2195 0.80 +0.4
322,331 - 10563 mRNA_2195 0.81 -0.0
322,463 + 10563 mRNA_2195 0.85 +0.3
322,578 + 10563 mRNA_2195 0.88 -2.5
322,897 - -1.0
323,314 + -1.5
323,318 - -0.3
323,445 + -0.7
323,627 + 10564 mRNA_2196 0.11 +0.3
323,823 - 10564 mRNA_2196 0.18 +0.0
323,843 - 10564 mRNA_2196 0.19 -0.0

Or see this region's nucleotide sequence