Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2248

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10615 and 10616 are separated by 351 nucleotides10616 and 10617 are separated by 348 nucleotides mRNA_2247: 10615 - Hypothetical Protein, at 459,109 to 460,029 10615 mRNA_2248: 10616 - K01338 lon ATP-dependent Lon protease, at 460,381 to 463,216 10616 mRNA_2249: 10617 - K10753 ASF1 histone chaperone ASF1, at 463,565 to 464,577 10617

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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459,384 - 10615 mRNA_2247 0.30 -0.4
459,392 - 10615 mRNA_2247 0.31 +0.1
459,401 - 10615 mRNA_2247 0.32 -0.3
459,573 + 10615 mRNA_2247 0.50 +0.6
459,708 - 10615 mRNA_2247 0.65 +0.9
459,723 + 10615 mRNA_2247 0.67 -1.1
459,772 - 10615 mRNA_2247 0.72 -0.6
460,165 + -1.2
460,424 - +1.3
460,578 + +0.2
460,876 + 10616 mRNA_2248 0.17 -0.8
461,060 + 10616 mRNA_2248 0.24 -0.5
461,320 + 10616 mRNA_2248 0.33 -1.3
462,068 - 10616 mRNA_2248 0.59 +0.4
462,488 + 10616 mRNA_2248 0.74 +0.1
462,934 + +0.8
463,151 + -0.5
463,343 + +0.4
463,349 + +0.1
463,619 - -0.5

Or see this region's nucleotide sequence