Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2265

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10631 and 10632 are separated by 422 nucleotides10632 and 10633 are separated by 287 nucleotides10633 and 10634 are separated by 89 nucleotides10634 and 10635 are separated by 101 nucleotides mRNA_2263: 10631 - K02882 RP-L18Ae, RPL18A large subunit ribosomal protein L18Ae, at 484,462 to 485,166 10631 mRNA_2264: 10632 - Hypothetical Protein, at 485,589 to 485,780 10632 mRNA_2265: 10633 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 486,068 to 487,753 10633 mRNA_2266: 10634 - Hypothetical Protein, at 487,843 to 488,421 10634 mRNA_2267: 10635 - K15110 SLC25A21, ODC solute carrier family 25 (mitochondrial 2-oxodicarboxylate transporter), member 21, at 488,523 to 490,039 10635

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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486,078 - -0.4
488,426 - -0.1
488,426 - +1.6
488,429 - +0.9
488,433 - -0.2
488,435 - -0.5
488,448 - +1.1
488,453 + -0.1
488,460 - +0.1
488,461 - -0.0
488,463 + -1.0
488,465 + -0.8
488,474 - +1.6
488,483 + +0.5
488,608 + -0.6
488,612 - +0.3
488,624 + -0.2

Or see this region's nucleotide sequence