Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2331

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10699 and 10700 are separated by 860 nucleotides mRNA_2331: 10699 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 634,514 to 637,179 10699 mRNA_2332: 10700 - KOG1134 Uncharacterized conserved protein, at 638,040 to 641,999 10700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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633,733 - -0.3
634,033 + -2.2
634,149 + +1.2
634,173 + +0.0
634,175 + -0.0
634,446 - -1.3
634,457 + -0.4
634,474 + +0.7
634,609 - -1.8
634,723 - -0.3
634,885 - 10699 mRNA_2331 0.14 -1.5
634,893 + 10699 mRNA_2331 0.14 -0.6
634,900 + 10699 mRNA_2331 0.14 +1.1
635,200 + 10699 mRNA_2331 0.26 -1.2
635,210 + 10699 mRNA_2331 0.26 -0.6
635,652 + 10699 mRNA_2331 0.43 -0.7
636,376 + 10699 mRNA_2331 0.70 +0.5
636,509 + 10699 mRNA_2331 0.75 -2.1
636,656 - 10699 mRNA_2331 0.80 +0.8
636,803 - 10699 mRNA_2331 0.86 -0.5
636,945 + +0.1
637,096 + -0.4
637,191 - +0.2
637,227 - +0.4
637,227 + +0.6
637,228 + -0.2
637,242 - -0.2
637,252 - -0.1
637,261 - -0.9
637,261 - +0.1
637,262 - +0.3
637,265 + +0.7
637,266 + +0.4
637,278 + -0.0
637,375 - -0.3
637,385 - -1.5
637,392 - -1.9
637,425 - -0.5
637,557 - +0.2
637,562 + -1.3
637,564 - +0.2
637,565 - -0.6
637,567 - -0.2
637,569 - -0.5
637,578 + -0.1
637,579 + -0.4
637,706 - -0.6
637,710 + +0.1
637,739 + -0.3
637,740 + -0.2
637,895 + +0.0
637,903 - +0.1
638,151 + -0.5

Or see this region's nucleotide sequence