Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2343

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10710 and 10711 are separated by 170 nucleotides10711 and 10712 are separated by 237 nucleotides mRNA_2342: 10710 - Hypothetical Protein, at 667,459 to 669,644 10710 mRNA_2343: 10711 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 669,815 to 670,967 10711 mRNA_2344: 10712 - Hypothetical Protein, at 671,205 to 671,888 10712

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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669,314 - 10710 mRNA_2342 0.85 -1.2
669,337 - 10710 mRNA_2342 0.86 -0.5
669,450 - -1.6
669,693 + -0.0
670,027 - 10711 mRNA_2343 0.18 +0.2
670,315 + 10711 mRNA_2343 0.43 +0.3
670,592 + 10711 mRNA_2343 0.67 -1.3
670,904 + -0.8
671,166 + -0.3
671,171 + -1.0
671,242 - -0.5
671,344 - 10712 mRNA_2344 0.20 -0.5
671,589 + 10712 mRNA_2344 0.56 -0.8
671,636 - 10712 mRNA_2344 0.63 -1.5
671,648 + 10712 mRNA_2344 0.65 -0.9
671,669 - 10712 mRNA_2344 0.68 -0.2
671,686 - 10712 mRNA_2344 0.70 -1.2
671,697 - 10712 mRNA_2344 0.72 +0.5
671,711 + 10712 mRNA_2344 0.74 +0.1
671,799 - 10712 mRNA_2344 0.87 -0.4
671,818 - 10712 mRNA_2344 0.90 +1.0
671,820 + -0.6
671,827 + +0.3
671,829 + +0.1
671,854 - -0.6
671,878 - -0.4
671,928 - +0.1
671,941 + -0.7
671,952 - -0.4

Or see this region's nucleotide sequence