Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2417

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10784 and 10785 are separated by 157 nucleotides10785 and 10786 are separated by 959 nucleotides mRNA_2416: 10784 - SUPERFAMILY--SSF51445, at 72,061 to 74,634 10784 mRNA_2417: 10785 - SUPERFAMILY--SSF52047, at 74,792 to 76,110 10785 mRNA_2418: 10786 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 77,070 to 79,296 10786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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74,016 + 10784 mRNA_2416 0.76 +0.5
74,257 + 10784 mRNA_2416 0.85 +0.1
74,478 + +0.9
74,481 + +0.2
74,542 - -0.4
74,605 + -0.6
74,777 - +1.0
75,237 + 10785 mRNA_2417 0.34 +1.7
75,400 + 10785 mRNA_2417 0.46 -0.9
75,428 + 10785 mRNA_2417 0.48 -0.9
75,987 - +0.6
76,075 - -1.8
76,116 - -1.7
76,120 - -0.7
76,168 - +1.5
76,252 - -0.6
76,258 - +0.3
76,267 + -0.2
76,425 - -1.6
76,446 + +0.9
76,447 - -1.6
76,460 + +0.3
76,557 - -1.9
76,594 - -0.4
76,974 + +0.3

Or see this region's nucleotide sequence