Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2424

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10791 and 10792 are separated by 581 nucleotides10792 and 10793 are separated by 119 nucleotides mRNA_2423: 10791 - BLAST proteophosphoglycan ppg4 [Moesziomyces aphidis DSM 70..., at 86,088 to 89,055 10791 mRNA_2424: 10792 - KOG1605 TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation), at 89,637 to 90,963 10792 mRNA_2425: 10793 - K02732 PSMB1 20S proteasome subunit beta 6, at 91,083 to 92,591 10793

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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88,681 - 10791 mRNA_2423 0.87 +0.5
88,830 + -0.6
88,997 - -0.6
89,118 - -0.3
89,132 - +1.5
89,162 - -0.6
89,172 + +0.0
89,173 + -1.6
89,183 + -0.5
89,429 + -1.2
89,593 + +0.0
89,614 - -1.3
90,049 - 10792 mRNA_2424 0.31 +1.0
90,346 - 10792 mRNA_2424 0.53 -0.1
90,434 + 10792 mRNA_2424 0.60 +0.2
90,461 - 10792 mRNA_2424 0.62 +0.3
90,551 - 10792 mRNA_2424 0.69 +1.5

Or see this region's nucleotide sequence