Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2434

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10801 and 10802 are separated by 723 nucleotides10802 and 10803 are separated by 967 nucleotides mRNA_2433: 10801 - K10866 RAD50 DNA repair protein RAD50, at 113,156 to 118,783 10801 mRNA_2434: 10802 - HMMPfam-ATP synthase subunit H-PF05493, at 119,507 to 119,841 10802 mRNA_2435: 10803 - Hypothetical Protein, at 120,809 to 121,330 10803

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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118,761 + +0.3
118,946 - -0.1
119,068 + -1.2
119,094 + -0.4
119,104 + +1.8
119,120 + -0.3
119,226 + -0.3
119,388 - +2.3
119,955 - -0.1
119,976 + -1.3
120,100 - -0.7
120,135 + -0.9
120,258 - -1.7
120,274 + -0.3
120,398 + -1.2
120,577 + +0.2
120,683 - -0.6
120,725 + +3.1
120,811 - +0.1
120,819 - +0.2
120,841 + +0.6

Or see this region's nucleotide sequence