Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2507

Experiment: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10874 and 10875 are separated by 648 nucleotides10875 and 10876 are separated by 904 nucleotides mRNA_2506: 10874 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 312,607 to 314,311 10874 mRNA_2507: 10875 - K11232 YPD1 osomolarity two-component system, phosphorelay intermediate protein YPD1, at 314,960 to 315,808 10875 mRNA_2508: 10876 - BLAST proteophosphoglycan ppg4 [Lichtheimia corymbifera JMR..., at 316,713 to 320,410 10876

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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314,005 + 10874 mRNA_2506 0.82 -0.7
314,092 - 10874 mRNA_2506 0.87 +0.1
314,098 - 10874 mRNA_2506 0.87 -0.5
314,119 - 10874 mRNA_2506 0.89 -0.5
314,124 - 10874 mRNA_2506 0.89 -0.5
314,250 - -0.1
314,256 - +0.2
314,272 + -0.1
314,339 + -1.5
314,380 - +0.1
314,391 + +0.3
314,394 + -0.3
314,496 + -0.3
314,509 + +0.8
314,520 - +0.4
314,536 - -0.5
314,541 - -0.5
314,541 - -0.2
314,546 - -0.5
314,546 - +0.7
314,546 + +0.1
314,550 + -1.1
314,553 - -0.4
314,617 + -0.3
314,673 - +0.3
314,674 + -0.3
314,679 + -0.0
314,685 - -0.3
314,689 + -0.6
314,696 + -1.0
314,708 + -1.4
314,723 + -0.9
314,739 + +0.1
316,297 - +0.1
316,327 + +0.7
316,347 + +1.9
316,353 - -0.1
316,415 - -0.5
316,471 + -0.6
316,488 - -0.4
316,503 + -1.6
316,503 + +0.1
316,503 + -0.2
316,505 - +0.5
316,513 + -0.6
316,517 - +0.0
316,530 + -1.1
316,531 - +0.3
316,536 + -0.6
316,536 - -0.2
316,548 + +0.4
316,618 - +0.2
316,687 - +0.9
316,703 + -0.5

Or see this region's nucleotide sequence